Cre01.g024200 (CSTF64)

Aliases : CSTF64

Description : RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF64/Rna15 component

Gene families : OG0001642 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001642_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre01.g024200

Target	Alias	Description	ECC score	Gene Family Method
Als_g62951	CSTF64	component *(ESP1) of Cleavage Stimulatory Factor (CstF)...	0.02	OrthoFinder output from all 47 species
Aspi01Gene40802.t1	CSTF64, Aspi01Gene40802	component *(ESP1) of Cleavage Stimulatory Factor (CstF)...	0.02	OrthoFinder output from all 47 species
Azfi_s0245.g059945	CSTF64	component *(CstF64/Rna15) of Cleavage Stimulatory Factor...	0.02	OrthoFinder output from all 47 species
Azfi_s1840.g107362	ESP1	not classified & original description: CDS=1-1260	0.02	OrthoFinder output from all 47 species
Ceric.11G063300.1	ESP1, Ceric.11G063300	component *(ESP1) of Cleavage Stimulatory Factor (CstF)...	0.03	OrthoFinder output from all 47 species
Ceric.32G017200.1	CSTF64, Ceric.32G017200	component *(CstF64/Rna15) of Cleavage Stimulatory Factor...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021433.15	No alias	No description available	0.01	OrthoFinder output from all 47 species
GSVIVT01013670001	CSTF64	RNA processing.RNA 3-end polyadenylation.Cleavage...	0.01	OrthoFinder output from all 47 species
Gb_06606	ESP1	component ESP1 of Cleavage Stimulatory Factor (CstF) complex	0.01	OrthoFinder output from all 47 species
Gb_13366	ESP1	component ESP1 of Cleavage Stimulatory Factor (CstF) complex	0.01	OrthoFinder output from all 47 species
LOC_Os05g43780.1	ESP1, LOC_Os05g43780	component ESP1 of Cleavage Stimulatory Factor (CstF) complex	0.03	OrthoFinder output from all 47 species
Mp4g14470.1	CSTF64	component CstF64/Rna15 of Cleavage Stimulatory Factor...	0.04	OrthoFinder output from all 47 species
Ore_g11259	ESP1	component *(ESP1) of Cleavage Stimulatory Factor (CstF)...	0.01	OrthoFinder output from all 47 species
Solyc02g069160.3.1	CSTF64, Solyc02g069160	component CstF64/Rna15 of Cleavage Stimulatory Factor...	0.02	OrthoFinder output from all 47 species
Solyc03g119460.4.1	ESP1, Solyc03g119460	component ESP1 of Cleavage Stimulatory Factor (CstF) complex	0.02	OrthoFinder output from all 47 species
Spa_g25960	CSTF64	component *(CstF64/Rna15) of Cleavage Stimulatory Factor...	0.02	OrthoFinder output from all 47 species
Zm00001e032123_P001	ESP1, Zm00001e032123	component ESP1 of Cleavage Stimulatory Factor (CstF) complex	0.02	OrthoFinder output from all 47 species

cellular nitrogen compound metabolic process

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	toggle="tooltip" data-placement="top" title="View ECC pair as graph">
LOC_Os05g43780.1	ESP1, LOC_Os05g43780	component ESP1 of Cleavage Stimulatory Factor (CstF) complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	9	78
IPR026896	CSTF_C	348	383
IPR025742	CSTF2_hinge	147	208

External Links

No external refs found!

Cre01.g024200 (CSTF64)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation