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  5. Cre01.g020400

Cre01.g020400 (SMU1)


Aliases : SMU1

Description : Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana


Gene families : OG0006796 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006796_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g020400
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00133460 SMU1,... Suppressor of mec-8 and unc-52 protein homolog 1... 0.02 OrthoFinder output from all 47 species
Als_g00943 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Aop_g11172 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene48663.t1 SMU1, Aspi01Gene48663 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Ceric.12G061400.1 SMU1, Ceric.12G061400 component *(SMU1) of SMU splicing factor complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000863.17 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.05 OrthoFinder output from all 47 species
Gb_10805 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.02 OrthoFinder output from all 47 species
LOC_Os01g21940.1 SMU1, LOC_Os01g21940 Suppressor of mec-8 and unc-52 protein homolog 1... 0.03 OrthoFinder output from all 47 species
Len_g02315 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g03888 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Mp4g04520.1 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.04 OrthoFinder output from all 47 species
Nbi_g14723 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009258 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Solyc06g064830.3.1 SMU1, Solyc06g064830 Suppressor of mec-8 and unc-52 protein homolog 1... 0.01 OrthoFinder output from all 47 species
Spa_g47371 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.01 OrthoFinder output from all 47 species
Tin_g08981 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e017539_P002 SMU1, Zm00001e017539 Suppressor of mec-8 and unc-52 protein homolog 1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 296 333
IPR001680 WD40_repeat 340 377
IPR001680 WD40_repeat 263 292
IPR001680 WD40_repeat 221 242
No external refs found!