LOC_Os04g45040.3


Description : DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica (sp|q7xmk8|rh6_orysj : 880.0)


Gene families : OG_01_0002759 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002759_tree ,
OG_02_0002600 (LandPlants) Phylogenetic Tree(s): OG_02_0002600_tree ,
OG_03_0003057 (SeedPlants) Phylogenetic Tree(s): OG_03_0003057_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g45040.3
Cluster HCCA: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001086.7 No alias DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.03 Archaeplastida
GSVIVT01019787001 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01026866001 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.04 Archaeplastida
MA_10428543g0010 No alias No annotation 0.03 Archaeplastida
Mp7g14570.1 No alias DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.05 Archaeplastida
Pp3s121_40V3.1 No alias RNAhelicase-like 8 0.04 Archaeplastida
Solyc05g048850.4.1 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.03 Archaeplastida
Solyc10g017530.3.1 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e004416_P001 No alias DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.08 Archaeplastida
Zm00001e012585_P001 No alias DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.04 Archaeplastida
AMTR_s00009p00258110 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.02 LandPlants
AT3G61240 No alias DEA(D/H)-box RNA helicase family protein 0.02 LandPlants
GSVIVT01019787001 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.02 LandPlants
GSVIVT01026866001 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.04 LandPlants
MA_10428543g0010 No alias No annotation 0.02 LandPlants
Mp7g14570.1 No alias DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.04 LandPlants
Pp3s121_40V3.1 No alias RNAhelicase-like 8 0.04 LandPlants
Solyc05g048850.4.1 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.03 LandPlants
Solyc10g017530.3.1 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis... 0.04 LandPlants
Zm00001e004416_P001 No alias DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.08 LandPlants
Zm00001e012585_P001 No alias DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.03 LandPlants
AT3G61240 No alias DEA(D/H)-box RNA helicase family protein 0.02 SeedPlants
GSVIVT01019787001 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.02 SeedPlants
GSVIVT01026866001 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.04 SeedPlants
MA_10428543g0010 No alias No annotation 0.02 SeedPlants
Solyc05g048850.4.1 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.03 SeedPlants
Solyc10g017530.3.1 No alias DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis... 0.04 SeedPlants
Zm00001e004416_P001 No alias DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.08 SeedPlants
Zm00001e012585_P001 No alias DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 149 313
IPR001650 Helicase_C 350 456
No external refs found!