GSVIVT01038188001 (OLI7, RPL5B)

Aliases : OLI7, RPL5B

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL5 component

Gene families : OG0002471 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002471_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01038188001
Cluster	HCCA: Cluster_62

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00162800	OLI5, RPL5A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
AT3G25520	OLI5, RPL5A, PGY3, ATL5	ribosomal protein L5	0.22	OrthoFinder output from all 47 species
AT5G39740	OLI7, RPL5B	ribosomal protein L5 B	0.24	OrthoFinder output from all 47 species
Adi_g073146	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aev_g23295	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g04462	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g23151	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Azfi_s0136.g050950	OLI7, RPL5B	not classified & original description: CDS=209-979	0.14	OrthoFinder output from all 47 species
Cba_g07470	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.24G049300.1	OLI7, RPL5B,...	component *(uL18) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Ceric.24G050100.1	OLI7, RPL5B,...	component *(uL18) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000194.49	OLI7, RPL5B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
Cre14.g621450	OLI7, RPL5B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Dac_g27299	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g01074	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g34942	OLI5, RPL5A, PGY3, ATL5	component *(uL18) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g08236	OLI5, RPL5A, PGY3, ATL5	component *(uL18) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Gb_16695	OLI7, RPL5B	component RPL5 of LSU proteome component	0.13	OrthoFinder output from all 47 species
LOC_Os01g67134.1	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Len_g09553	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Lfl_g02783	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g21527	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
MA_70965g0010	OLI7, RPL5B	component RPL5 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Mp4g15800.1	OLI7, RPL5B	component RPL5 of LSU proteome component	0.18	OrthoFinder output from all 47 species
Msp_g02730	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Nbi_g20406	OLI5, RPL5A, PGY3, ATL5	component *(uL18) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g16843	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g01232	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pp3c1_7160V3.1	OLI7, RPL5B, Pp3c1_7160	ribosomal protein L5 B	0.07	OrthoFinder output from all 47 species
Pp3c7_25660V3.1	OLI7, RPL5B, Pp3c7_25660	ribosomal protein L5 B	0.1	OrthoFinder output from all 47 species
Ppi_g16089	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g56184	OLI5, RPL5A, PGY3, ATL5	component *(uL18) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006742	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g10501	No alias	component *(uL18) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g12335	No alias	component *(uL18) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g20151	No alias	component *(uL18) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g20152	No alias	component *(uL18) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Sam_g29764	No alias	component *(uL18) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Smo144921	OLI5, RPL5A, PGY3, ATL5	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Solyc06g007670.4.1	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.25	OrthoFinder output from all 47 species
Solyc06g082870.4.1	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Solyc09g020130.3.1	OLI7, RPL5B,...	component RPL5 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Spa_g05892	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Spa_g15116	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Spa_g38167	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Spa_g43318	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Spa_g53510	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Tin_g01672	OLI7, RPL5B	component *(uL18) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Zm00001e000256_P001	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.13	OrthoFinder output from all 47 species
Zm00001e018972_P001	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Zm00001e028563_P004	OLI5, RPL5A,...	component RPL5 of LSU proteome component	0.2	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008097	5S rRNA binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005485	Rbsml_L5_euk/L18_arc	46	207
IPR025607	Rbsml_L5e_C	223	312

External Links

No external refs found!

GSVIVT01038188001 (OLI7, RPL5B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation