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  5. GSVIVT01038137001

GSVIVT01038137001 (EMB2777)


Aliases : EMB2777

No description available


Gene families : OG0001866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01038137001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT1G07840 No alias Sas10/Utp3/C1D family 0.04 OrthoFinder output from all 47 species
AT2G43650 EMB2777 Sas10/U3 ribonucleoprotein (Utp) family protein 0.05 OrthoFinder output from all 47 species
Adi_g018904 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.04 OrthoFinder output from all 47 species
Aev_g01292 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.45 EMB2777 No description available 0.04 OrthoFinder output from all 47 species
Cre09.g394399 EMB2777 No description available 0.12 OrthoFinder output from all 47 species
Dcu_g09906 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Dcu_g23543 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g13581 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.06 OrthoFinder output from all 47 species
LOC_Os01g01510.1 EMB2777, LOC_Os01g01510 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g47069 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.05 OrthoFinder output from all 47 species
MA_348135g0010 EMB2777 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp4g18120.1 EMB2777 no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
Ppi_g32577 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Sam_g03172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo405212 EMB2777 No description available 0.03 OrthoFinder output from all 47 species
Solyc04g076560.3.1 Solyc04g076560 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g072390.2.1 EMB2777, Solyc11g072390 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Spa_g29151 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.04 OrthoFinder output from all 47 species
Tin_g14242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20581 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.03 OrthoFinder output from all 47 species
Zm00001e003450_P001 EMB2777, Zm00001e003450 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e028507_P001 Zm00001e028507 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007146 Sas10/Utp3/C1D 295 373
IPR018972 Sas10_C_dom 644 717
No external refs found!