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  5. GSVIVT01037635001

GSVIVT01037635001 (ATRBP45C)


Aliases : ATRBP45C

Description : Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037635001
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00157p00079360 ATRBP47C',... Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00157p00080130 ATRBP47B,... Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.04 OrthoFinder output from all 47 species
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.05 OrthoFinder output from all 47 species
Als_g07576 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Als_g26974 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Cba_g05169 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g07985 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Cba_g32292 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g59919 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.06G012700.1 Ceric.06G012700 regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.30G047300.1 ATRBP47B,... regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Ceric.33G008000.1 ATRBP47B,... regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Cre16.g652900 ATRBP45A, RBP45A Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ehy_g25604 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Len_g17526 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Nbi_g09272 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Nbi_g12374 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ore_g09196 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pp3c12_10910V3.1 Pp3c12_10910 RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
Pp3c12_10960V3.1 Pp3c12_10960 RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021456 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021871 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Sam_g15117 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Solyc01g108500.4.1 ATRBP47B,... mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species
Solyc03g031720.3.1 ATRBP45C, Solyc03g031720 mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Solyc07g064510.3.1 ATRBP45C, Solyc07g064510 mRNA-binding regulatory factor (RBP45/47) 0.05 OrthoFinder output from all 47 species
Solyc10g005260.3.1 RBP45B,... mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species
Solyc11g065880.2.1 Solyc11g065880 mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Spa_g07132 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Spa_g51224 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Tin_g11427 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Zm00001e009967_P001 ATRBP47C,... mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 54 117
No external refs found!