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  5. GSVIVT01037455001

GSVIVT01037455001 (FRS3)


Aliases : FRS3

Description : RNA biosynthesis.transcriptional activation.FAR1 transcription factor


Gene families : OG0002906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002906_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037455001

Target Alias Description ECC score Gene Family Method Actions
AT1G52520 FRS6 FAR1-related sequence 6 0.03 OrthoFinder output from all 47 species
AT1G76320 FRS4 FAR1-related sequence 4 0.03 OrthoFinder output from all 47 species
AT3G06250 FRS7 FAR1-related sequence 7 0.02 OrthoFinder output from all 47 species
AT3G22170 FHY3 far-red elongated hypocotyls 3 0.05 OrthoFinder output from all 47 species
LOC_Os02g39520.2 FRS6, LOC_Os02g39520 transcription factor (FAR1) 0.05 OrthoFinder output from all 47 species
LOC_Os03g15010.1 FRS6, LOC_Os03g15010 transcription factor (FAR1) 0.05 OrthoFinder output from all 47 species
LOC_Os03g62660.1 FRS8, LOC_Os03g62660 transcription factor (FAR1) 0.05 OrthoFinder output from all 47 species
LOC_Os07g31400.1 FRS4, LOC_Os07g31400 transcription factor (FAR1) 0.07 OrthoFinder output from all 47 species
LOC_Os07g42400.1 FAR1, LOC_Os07g42400 transcription factor (FAR1) 0.03 OrthoFinder output from all 47 species
LOC_Os08g06930.1 FRS9, LOC_Os08g06930 transcription factor (FAR1) 0.07 OrthoFinder output from all 47 species
LOC_Os12g12380.1 FRS5, LOC_Os12g12380 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species
Solyc01g112320.3.1 FRS5, Solyc01g112320 transcription factor (FAR1) 0.05 OrthoFinder output from all 47 species
Solyc07g043270.3.1 FHY3, Solyc07g043270 transcription factor (FAR1). FRS-type red/far-red light... 0.03 OrthoFinder output from all 47 species
Solyc10g084220.3.1 FRS7, Solyc10g084220 transcription factor (FAR1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 277 368
IPR007527 Znf_SWIM 555 589
IPR017920 COMM 822 868
IPR017920 COMM 753 819
IPR004330 FAR1_DNA_bnd_dom 64 139
No external refs found!