GSVIVT01037136001 (ARF1)

Aliases : ARF1

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01037136001

Target	Alias	Description	ECC score	Gene Family Method
AT5G20730	TIR5, MSG1,...	Transcriptional factor B3 family protein /...	0.1	OrthoFinder output from all 47 species
AT5G62000	HSS, ARF1-BP, ARF2, ORE14	auxin response factor 2	0.03	OrthoFinder output from all 47 species
Adi_g059116	ARF6	transcriptional repressor *(IAA/AUX) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g11824	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g32218	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g06737	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g19338	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09257	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g15200	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_31132	ARF4	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Gb_39786	ARF16	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os06g46410.1	ARF6, LOC_Os06g46410	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os10g33940.1	ARF16, LOC_Os10g33940	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Lfl_g05750	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g07404	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10022392g0010	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
MA_10431695g0010	ARF19, IAA22, ARF11	Auxin response factor 19 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_122218g0010	ARF19, IAA22, ARF11	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
MA_55076g0010	ARF6	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Mp1g07070.1	ARF10	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Msp_g13825	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g15236	ARF1	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g50454	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g04517	ARF6	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g25160	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000212	ARF4	not classified & original description: CDS=1-1212	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: CDS=1-3501	0.03	OrthoFinder output from all 47 species
Sam_g04406	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16843	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g49817	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo115320	ARF6	Auxin response factor 25 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
Solyc12g042070.3.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Spa_g29541	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003591_P003	ARF19, IAA22,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e016366_P002	ARF11, Zm00001e016366	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e041866_P001	MP, IAA24, ARF5,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	125	225
IPR010525	ARF_dom	251	333
IPR033389	AUX/IAA_dom	488	609

External Links

No external refs found!

GSVIVT01037136001 (ARF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation