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  5. GSVIVT01036776001

GSVIVT01036776001


Description : Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana


Gene families : OG0001590 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001590_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01036776001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00109950 evm_27.TU.AmTr_v1... Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT4G12750 No alias Homeodomain-like transcriptional regulator 0.06 OrthoFinder output from all 47 species
Aop_g09051 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Cba_g05343 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dac_g05474 HB-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16445 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ehy_g30736 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
LOC_Os07g42750.1 LOC_Os07g42750 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10432531g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009354 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Solyc11g006200.2.1 Solyc11g006200 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR018501 DDT_dom 381 435
IPR028942 WHIM1_dom 694 733
IPR028941 WHIM2_dom 827 901
IPR001356 Homeobox_dom 25 75
No external refs found!