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  5. GSVIVT01036537001

GSVIVT01036537001


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Imp3 assembly factor


Gene families : OG0006323 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006323_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01036537001
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0131.g049123 No alias SSU processome assembly factor *(IMP3) & original... 0.07 OrthoFinder output from all 47 species
Ceric.30G011800.1 Ceric.30G011800 SSU processome assembly factor *(IMP3) & original... 0.03 OrthoFinder output from all 47 species
Cre03.g170750 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Gb_30440 No alias SSU processome assembly factor (IMP3) 0.05 OrthoFinder output from all 47 species
LOC_Os04g56670.2 LOC_Os04g56670 SSU processome assembly factor (IMP3) 0.1 OrthoFinder output from all 47 species
MA_4242g0010 No alias SSU processome assembly factor (IMP3) 0.06 OrthoFinder output from all 47 species
Mp3g02070.1 No alias SSU processome assembly factor (IMP3) 0.03 OrthoFinder output from all 47 species
Pnu_g00323 No alias SSU processome assembly factor *(IMP3) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g089280.3.1 Solyc02g089280 SSU processome assembly factor (IMP3) 0.04 OrthoFinder output from all 47 species
Spa_g01274 No alias SSU processome assembly factor *(IMP3) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e030898_P005 Zm00001e030898 SSU processome assembly factor (IMP3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 3 62
IPR002942 S4_RNA-bd 107 152
No external refs found!