GSVIVT01036255001

Description : Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana

Gene families : OG0014096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0014096_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01036255001
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01020691001	No alias	Pentatricopeptide repeat-containing protein At5g16640,...	0.08	OrthoFinder output from all 47 species
Solyc04g080120.1.1	Solyc04g080120	Pentatricopeptide repeat-containing protein At1g62670,...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	882	930
IPR002885	Pentatricopeptide_repeat	671	720
IPR002885	Pentatricopeptide_repeat	741	790
IPR002885	Pentatricopeptide_repeat	428	475
IPR002885	Pentatricopeptide_repeat	148	197
IPR002885	Pentatricopeptide_repeat	812	860
IPR002885	Pentatricopeptide_repeat	289	337
IPR002885	Pentatricopeptide_repeat	218	266
IPR002885	Pentatricopeptide_repeat	620	663
IPR002885	Pentatricopeptide_repeat	110	141
IPR002885	Pentatricopeptide_repeat	357	384
IPR002885	Pentatricopeptide_repeat	392	419

External Links

No external refs found!