AMTR_s00069p00171910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00069.147

Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG_01_0000415 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000415_tree ,
OG_02_0000215 (LandPlants) Phylogenetic Tree(s): OG_02_0000215_tree ,
OG_03_0000299 (SeedPlants) Phylogenetic Tree(s): OG_03_0000299_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00171910
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AT1G35560 No alias TCP family transcription factor 0.03 Archaeplastida
AT1G58100 No alias TCP family transcription factor 0.04 Archaeplastida
AT2G45680 No alias TCP family transcription factor 0.06 Archaeplastida
AT5G08330 No alias TCP family transcription factor 0.11 Archaeplastida
LOC_Os02g51280.1 No alias transcription factor (TCP) 0.02 Archaeplastida
LOC_Os08g43160.1 No alias transcription factor (TCP) 0.02 Archaeplastida
LOC_Os12g07480.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc02g068200.1.1 No alias transcription factor (TCP). TCP20 circadian clock... 0.02 Archaeplastida
Solyc04g009180.3.1 No alias transcription factor (TCP). CHE circadian clock repression factor 0.03 Archaeplastida
Solyc11g020670.1.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e003744_P001 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e023066_P001 No alias transcription factor (TCP). CHE circadian clock repression factor 0.07 Archaeplastida
Zm00001e039492_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
AT1G35560 No alias TCP family transcription factor 0.03 LandPlants
AT1G58100 No alias TCP family transcription factor 0.04 LandPlants
AT1G72010 No alias TCP family transcription factor 0.02 LandPlants
AT2G45680 No alias TCP family transcription factor 0.05 LandPlants
AT5G08330 No alias TCP family transcription factor 0.11 LandPlants
LOC_Os02g51280.1 No alias transcription factor (TCP) 0.02 LandPlants
LOC_Os08g43160.1 No alias transcription factor (TCP) 0.02 LandPlants
LOC_Os12g07480.1 No alias transcription factor (TCP) 0.02 LandPlants
MA_10428794g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_16752g0010 No alias transcription factor (TCP) 0.02 LandPlants
Pp3c3_24660V3.1 No alias TCP family transcription factor 0.01 LandPlants
Solyc02g068200.1.1 No alias transcription factor (TCP). TCP20 circadian clock... 0.02 LandPlants
Solyc04g009180.3.1 No alias transcription factor (TCP). CHE circadian clock repression factor 0.03 LandPlants
Solyc09g008030.1.1 No alias transcription factor (TCP) 0.02 LandPlants
Solyc11g020670.1.1 No alias transcription factor (TCP) 0.03 LandPlants
Zm00001e003744_P001 No alias transcription factor (TCP) 0.04 LandPlants
Zm00001e023066_P001 No alias transcription factor (TCP). CHE circadian clock repression factor 0.06 LandPlants
Zm00001e039492_P001 No alias transcription factor (TCP) 0.03 LandPlants
AT5G08330 No alias TCP family transcription factor 0.07 SeedPlants
LOC_Os02g51280.1 No alias transcription factor (TCP) 0.02 SeedPlants
MA_16752g0010 No alias transcription factor (TCP) 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005333 Transcription_factor_TCP 80 204
No external refs found!