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  5. GSVIVT01036186001

GSVIVT01036186001


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana


Gene families : OG0043479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01036186001
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g32780.1 LOC_Os02g32780 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Zm00001e014716_P001 Zm00001e014716 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 289 314
IPR002885 Pentatricopeptide_repeat 632 659
IPR002885 Pentatricopeptide_repeat 603 628
IPR002885 Pentatricopeptide_repeat 54 80
IPR002885 Pentatricopeptide_repeat 261 287
IPR002885 Pentatricopeptide_repeat 703 724
IPR002885 Pentatricopeptide_repeat 667 693
IPR002885 Pentatricopeptide_repeat 83 109
IPR032867 DYW_dom 801 920
IPR002885 Pentatricopeptide_repeat 427 474
IPR002885 Pentatricopeptide_repeat 185 232
No external refs found!