GSVIVT01036166001 (VPS4, SKD1, ATSKD1)

Aliases : VPS4, SKD1, ATSKD1

Description : Vesicle trafficking.endomembrane trafficking.ESCRT (Endosomal Sorting Complex Required for Transport) complexes.VPS4-VTA1 ESCRT-disassembly complex.VPS4/SKD1 ATPase component

Gene families : OG0002846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01036166001

Target	Alias	Description	ECC score	Gene Family Method
Aev_g03883	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Ceric.04G022900.1	VPS4, SKD1,...	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
Cre02.g079300	VPS4, SKD1, ATSKD1	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.02	OrthoFinder output from all 47 species
Dcu_g14391	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
LOC_Os01g04814.1	VPS4, SKD1,...	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.03	OrthoFinder output from all 47 species
Lfl_g27517	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
MA_67052g0010	VPS4, SKD1, ATSKD1	Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1...	0.03	OrthoFinder output from all 47 species
Sam_g37514	No alias	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Smo267596	VPS4, SKD1, ATSKD1	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.03	OrthoFinder output from all 47 species
Solyc11g067230.2.1	VPS4, SKD1,...	serine carboxypeptidase. ATPase component VPS4/SKD1 of...	0.02	OrthoFinder output from all 47 species
Spa_g25791	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
Zm00001e016954_P004	VPS4, SKD1,...	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	111	240
IPR015415	Vps4_C	310	374
IPR007330	MIT_dom	2	38

External Links

No external refs found!

GSVIVT01036166001 (VPS4, SKD1, ATSKD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation