LOC_Os04g43050.1

Description : endoribonuclease (DCL4)

Gene families : OG_01_0000221 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000221_tree ,
OG_02_0000940 (LandPlants) Phylogenetic Tree(s): OG_02_0000940_tree ,
OG_03_0002089 (SeedPlants) Phylogenetic Tree(s): OG_03_0002089_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g43050.1
Cluster	HCCA: Cluster_199

Target	Alias	Description	ECC score	Gene Family Method
AT1G01040	DCL1, CAF,...	dicer-like 1	0.06	Archaeplastida
AT3G03300	ATDCL2, DCL2	dicer-like 2	0.06	Archaeplastida
AT5G20320	DCL4, ATDCL4	dicer-like 4	0.09	Archaeplastida
Cpa\|evm.model.tig00000741.31	No alias	No description available	0.02	Archaeplastida
Cre07.g345900	No alias	No description available	0.02	Archaeplastida
Gb_34257	No alias	Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp....	0.02	Archaeplastida
Gb_36405	No alias	Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana...	0.01	Archaeplastida
MA_10432726g0010	No alias	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.03	Archaeplastida
MA_10437243g0010	No alias	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.04	Archaeplastida
MA_10437243g0020	No alias	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.07	Archaeplastida
MA_6956785g0010	No alias	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.04	Archaeplastida
Mp7g11720.1	No alias	endoribonuclease (DCL3). endoribonuclease (DCL4)	0.03	Archaeplastida
Mp7g12090.1	No alias	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.02	Archaeplastida
Pp3c1_24960V3.1	No alias	dicer-like 1	0.03	Archaeplastida
Pp3c2_15900V3.1	No alias	dicer-like 1	0.04	Archaeplastida
Smo444049	No alias	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	Archaeplastida
Smo74321	No alias	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	Archaeplastida
Smo86110	No alias	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.03	Archaeplastida
Solyc08g067210.3.1	No alias	endoribonuclease (DCL3)	0.05	Archaeplastida
Zm00001e018890_P004	No alias	endoribonuclease (DCL3)	0.06	Archaeplastida
Zm00001e041209_P001	No alias	endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1...	0.04	Archaeplastida
AT3G03300	ATDCL2, DCL2	dicer-like 2	0.06	LandPlants
AT5G20320	DCL4, ATDCL4	dicer-like 4	0.08	LandPlants
Gb_34257	No alias	Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp....	0.02	LandPlants
Mp7g11720.1	No alias	endoribonuclease (DCL3). endoribonuclease (DCL4)	0.03	LandPlants
Smo444049	No alias	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	LandPlants
Smo74321	No alias	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	LandPlants
Solyc07g005030.4.1	No alias	endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1...	0.02	LandPlants
Solyc08g067210.3.1	No alias	endoribonuclease (DCL3)	0.04	LandPlants
Zm00001e018890_P004	No alias	endoribonuclease (DCL3)	0.06	LandPlants
Zm00001e041209_P001	No alias	endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1...	0.04	LandPlants
AT3G03300	ATDCL2, DCL2	dicer-like 2	0.06	SeedPlants
AT5G20320	DCL4, ATDCL4	dicer-like 4	0.08	SeedPlants
Gb_34257	No alias	Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp....	0.02	SeedPlants
Solyc07g005030.4.1	No alias	endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1...	0.02	SeedPlants
Zm00001e041209_P001	No alias	endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1...	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEA	Interproscan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003100	PAZ_dom	772	900
IPR014720	dsRBD_dom	1285	1349
IPR005034	Dicer_dimerisation_dom	512	594
IPR001650	Helicase_C	329	446
IPR000999	RNase_III_dom	1149	1258
IPR000999	RNase_III_dom	943	1073

External Links

No external refs found!

LOC_Os04g43050.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation