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  5. GSVIVT01035985001

GSVIVT01035985001


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SR140 snRNP-associated protein


Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035985001

Target Alias Description ECC score Gene Family Method Actions
Adi_g011558 No alias snRNP-associated protein *(SR140) & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g026303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059804 No alias snRNP-associated protein *(SR140) & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g02691 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01963 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g42378 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g21519 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.14G097400.1 Ceric.14G097400 snRNP-associated protein *(SR140) & original... 0.12 OrthoFinder output from all 47 species
Dac_g01031 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10046 No alias snRNP-associated protein *(SR140) & original description: none 0.09 OrthoFinder output from all 47 species
Ehy_g29046 No alias snRNP-associated protein *(SR140) & original description: none 0.06 OrthoFinder output from all 47 species
Gb_18824 No alias snRNP-associated protein (SR140) 0.04 OrthoFinder output from all 47 species
LOC_Os02g08360.1 LOC_Os02g08360 snRNP-associated protein (SR140) 0.02 OrthoFinder output from all 47 species
Len_g31360 No alias snRNP-associated protein *(SR140) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g11150 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
MA_1061g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp6g17130.1 No alias snRNP-associated protein (SR140) 0.06 OrthoFinder output from all 47 species
Nbi_g03202 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09321 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02308 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g19248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g08483 No alias snRNP-associated protein *(SR140) & original description: none 0.08 OrthoFinder output from all 47 species
Solyc03g025280.4.1 Solyc03g025280 snRNP-associated protein (SR140) 0.07 OrthoFinder output from all 47 species
Spa_g12506 No alias snRNP-associated protein *(SR140) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g07962 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013823_P001 Zm00001e013823 snRNP-associated protein (SR140) 0.08 OrthoFinder output from all 47 species
Zm00001e013828_P003 Zm00001e013828 snRNP-associated protein (SR140) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
InterPro domains Description Start Stop
IPR000061 Surp 335 386
IPR000504 RRM_dom 189 261
IPR013170 mRNA_splic_Cwf21_dom 801 845
No external refs found!