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  5. GSVIVT01035963001

GSVIVT01035963001 (DRD2, NRPE2, NRPD2A,...)


Aliases : DRD2, NRPE2, NRPD2A, NRPD2, DMS2

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic subunits.subunit 2


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035963001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00249150 DRD2, NRPE2,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species
AMTR_s00068p00180360 EMB1989, RPB2,... DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G18090 NRPD2B nuclear RNA polymerase D2B 0.03 OrthoFinder output from all 47 species
AT5G45140 NRPC2 nuclear RNA polymerase C2 0.04 OrthoFinder output from all 47 species
Ala_g11519 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ala_g21244 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Ceric.05G021300.1 EMB1989, RPB2,... component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Ceric.30G032600.1 NRPC2, Ceric.30G032600 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Ceric.34G070500.1 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Dac_g02906 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g09431 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
LOC_Os03g44484.1 EMB1989, RPB2,... DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.03 OrthoFinder output from all 47 species
Len_g03917 DRD2, NRPE2,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10429035g0020 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.03 OrthoFinder output from all 47 species
Mp6g06170.1 NRPC2 subunit 2 of Pol III RNA polymerase 0.02 OrthoFinder output from all 47 species
Msp_g14155 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Ore_g18280 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Pir_g54715 EMB1989, RPB2, NRPB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g55088 EMB1989, RPB2, NRPB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007189 DRD2, NRPE2,... not classified & original description: CDS=512-4159 0.03 OrthoFinder output from all 47 species
Sam_g26686 No alias component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Smo443461 NRPC2 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
Solyc03g110880.4.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.04 OrthoFinder output from all 47 species
Zm00001e006792_P001 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.03 OrthoFinder output from all 47 species
Zm00001e041755_P001 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007641 RNA_pol_Rpb2_7 1119 1217
IPR007645 RNA_pol_Rpb2_3 533 592
IPR007647 RNA_pol_Rpb2_5 705 751
IPR007644 RNA_pol_bsu_protrusion 98 493
IPR007120 DNA-dir_RNAP_su2_dom 761 1117
IPR007646 RNA_pol_Rpb2_4 629 690
IPR007642 RNA_pol_Rpb2_2 314 456
No external refs found!