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  5. GSVIVT01035924001

GSVIVT01035924001 (ATX1, SDG27)


Aliases : ATX1, SDG27

Description : Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana


Gene families : OG0006147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035924001
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00150780 ATX1, SDG27,... Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Als_g59370 ATX3, SDG14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37518 SDG30, ATX2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os09g38440.1 SDG30, ATX2,... Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Smo424372 No alias Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Spa_g34816 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010324_P001 SDG30, ATX2,... Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 979 1086
No external refs found!