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  5. GSVIVT01035878001

GSVIVT01035878001


Description : Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana


Gene families : OG0002960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035878001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00122030 evm_27.TU.AmTr_v1... Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT2G25320 No alias TRAF-like family protein 0.13 OrthoFinder output from all 47 species
Adi_g029341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01607 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g05545 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g35642 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g16408 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene31458.t1 Aspi01Gene31458 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G028800.1 Ceric.02G028800 not classified & original description: pacid=50585664... 0.08 OrthoFinder output from all 47 species
Ceric.07G070900.1 Ceric.07G070900 not classified & original description: pacid=50626059... 0.06 OrthoFinder output from all 47 species
Dcu_g12067 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
MA_10430470g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10434824g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_24634g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
MA_9624g0010 No alias no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
Mp8g09710.1 No alias MATH domain and coiled-coil domain-containing protein... 0.05 OrthoFinder output from all 47 species
Msp_g47722 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Nbi_g24466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29810 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30269 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023847 No alias not classified & original description: CDS=1-5244 0.06 OrthoFinder output from all 47 species
Sam_g11589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo173767 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
Solyc06g017970.4.1 Solyc06g017970 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g28008 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e022965_P001 Zm00001e022965 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR029448 FANCD2 739 851
IPR002083 MATH/TRAF_dom 583 691
IPR002083 MATH/TRAF_dom 435 541
IPR002083 MATH/TRAF_dom 77 201
No external refs found!