LOC_Os04g42800.1


Description : Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana (sp|q9sry4|lpa1_arath : 109.0)


Gene families : OG_01_0002684 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002684_tree ,
OG_02_0008842 (LandPlants) Phylogenetic Tree(s): OG_02_0008842_tree ,
OG_03_0009438 (SeedPlants) Phylogenetic Tree(s): OG_03_0009438_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g42800.1
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00129550 evm_27.TU.AmTr_v1... Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.03 Archaeplastida
AMTR_s00045p00200960 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AT1G02910 LPA1 tetratricopeptide repeat (TPR)-containing protein 0.03 Archaeplastida
AT4G28740 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.06 Archaeplastida
Cre10.g430150 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
GSVIVT01028479001 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.05 Archaeplastida
MA_10430747g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_173127g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.05 Archaeplastida
MA_8804338g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.05 Archaeplastida
Pp3c12_5470V3.1 No alias No annotation 0.02 Archaeplastida
Smo134250 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Solyc09g063140.4.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc09g074880.4.1 No alias No annotation 0.02 Archaeplastida
Zm00001e007631_P002 No alias no hits & (original description: none) 0.02 Archaeplastida
AMTR_s00039p00129550 evm_27.TU.AmTr_v1... Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.02 LandPlants
AT4G28740 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.05 LandPlants
GSVIVT01028479001 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.04 LandPlants
MA_10430747g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_173127g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.03 LandPlants
Pp3c12_5470V3.1 No alias No annotation 0.02 LandPlants
Solyc09g063140.4.1 No alias no hits & (original description: none) 0.04 LandPlants
Zm00001e007631_P002 No alias no hits & (original description: none) 0.02 LandPlants
AT4G28740 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.05 SeedPlants
GSVIVT01028479001 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.04 SeedPlants
MA_10430747g0010 No alias no hits & (original description: none) 0.04 SeedPlants
MA_173127g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.03 SeedPlants
Solyc09g063140.4.1 No alias no hits & (original description: none) 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR021883 LPA1-like 70 146
No external refs found!