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  5. GSVIVT01035851001

GSVIVT01035851001 (SDE1, RDR6, SGS2)


Aliases : SDE1, RDR6, SGS2

Description : RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035851001

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene25333.t1 ATRDRP1, RDR1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_12326 SDE1, RDR6, SGS2 ssRNA polymerase (RDR6) 0.03 OrthoFinder output from all 47 species
Gb_17278 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g22980 ATRDRP1, RDR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10431382g0020 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pnu_g16856 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g014870.3.1 SDE1, RDR6,... ssRNA polymerase (RDR6) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 258 837
No external refs found!