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  5. GSVIVT01035621001

GSVIVT01035621001


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP75/85 scaffold nucleoporin


Gene families : OG0004258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004258_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035621001
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT4G32910 No alias CONTAINS InterPro DOMAIN/s: Nuclear pore complex... 0.03 OrthoFinder output from all 47 species
Aev_g04060 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.02 OrthoFinder output from all 47 species
Azfi_s0034.g025285 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.03 OrthoFinder output from all 47 species
Ceric.05G088400.1 Ceric.05G088400 scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.03 OrthoFinder output from all 47 species
Cre08.g383650 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os01g54240.1 LOC_Os01g54240 NUP75/85 scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Msp_g07563 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.03 OrthoFinder output from all 47 species
Solyc08g066580.4.1 Solyc08g066580 NUP75/85 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Tin_g06661 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011502 Nucleoporin_Nup85 81 677
No external refs found!