1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01035456001

GSVIVT01035456001


Description : E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana


Gene families : OG0001168 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001168_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035456001
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Aev_g29538 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Aob_g15312 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.39G057500.1 Ceric.39G057500 component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.93 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.01 OrthoFinder output from all 47 species
Dcu_g12334 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Pir_g15664 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Pnu_g32758 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Solyc08g061890.4.1 Solyc08g061890 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR014891 DWNN_domain 3 77
IPR001878 Znf_CCHC 441 457
No external refs found!