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  5. GSVIVT01034713001

GSVIVT01034713001 (DME)


Aliases : DME

Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).bifunctional DNA glycosylase/lyase (ROS1)


Gene families : OG0001282 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001282_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034713001

Target Alias Description ECC score Gene Family Method Actions
AT2G36490 DML1, ROS1 demeter-like 1 0.04 OrthoFinder output from all 47 species
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.06 OrthoFinder output from all 47 species
Adi_g116687 DML1, ROS1 methylcytosine-specific DNA glycosylase *(ROS1) &... 0.02 OrthoFinder output from all 47 species
Als_g47969 DML1, ROS1 methylcytosine-specific DNA glycosylase *(ROS1) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene54612.t1 DML1, ROS1,... methylcytosine-specific DNA glycosylase *(ROS1) &... 0.03 OrthoFinder output from all 47 species
Gb_09301 DME methylcytosine-specific DNA glycosylase (ROS1) 0.03 OrthoFinder output from all 47 species
LOC_Os01g11900.1 DME, LOC_Os01g11900 methylcytosine-specific DNA glycosylase (ROS1).... 0.05 OrthoFinder output from all 47 species
LOC_Os02g29380.1 DML1, ROS1,... methylcytosine-specific DNA glycosylase (ROS1) 0.03 OrthoFinder output from all 47 species
LOC_Os05g37350.1 DML1, ROS1,... methylcytosine-specific DNA glycosylase (ROS1).... 0.06 OrthoFinder output from all 47 species
LOC_Os05g37410.1 DML1, ROS1,... methylcytosine-specific DNA glycosylase (ROS1).... 0.07 OrthoFinder output from all 47 species
Len_g21153 DML1, ROS1 methylcytosine-specific DNA glycosylase *(ROS1) &... 0.03 OrthoFinder output from all 47 species
Lfl_g16203 DML1, ROS1 methylcytosine-specific DNA glycosylase *(ROS1) &... 0.02 OrthoFinder output from all 47 species
Msp_g20128 DML1, ROS1 methylcytosine-specific DNA glycosylase *(ROS1) &... 0.05 OrthoFinder output from all 47 species
Nbi_g38804 DML1, ROS1 methylcytosine-specific DNA glycosylase *(ROS1) &... 0.05 OrthoFinder output from all 47 species
Pir_g38271 DML1, ROS1 bifunctional DNA glycosylase/lyase *(ROS1) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g49432 DML1, ROS1 methylcytosine-specific DNA glycosylase *(ROS1) &... 0.04 OrthoFinder output from all 47 species
Zm00001e031766_P003 DML1, ROS1,... methylcytosine-specific DNA glycosylase (ROS1).... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR028925 RRM_DME 1508 1608
IPR028924 Perm-CXXC 1474 1505
No external refs found!