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  5. LOC_Os04g41560.2

LOC_Os04g41560.2


Description : transcription factor (BBX-DBB)


Gene families : OG_01_0000461 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000461_tree ,
OG_02_0000694 (LandPlants) Phylogenetic Tree(s): OG_02_0000694_tree ,
OG_03_0006215 (SeedPlants) Phylogenetic Tree(s): OG_03_0006215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g41560.2
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00043350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
AT4G10240 No alias B-box zinc finger family protein 0.03 Archaeplastida
GSVIVT01010794001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
GSVIVT01024173001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
Pp3c17_14230V3.1 No alias light-regulated zinc finger protein 1 0.03 Archaeplastida
Smo111647 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
Smo271535 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
Solyc12g089240.2.1 No alias transcription factor (BBX-DBB) 0.05 Archaeplastida
Zm00001e007720_P001 No alias transcription factor (BBX-DBB) 0.05 Archaeplastida
Zm00001e013262_P001 No alias transcription factor (BBX-DBB) 0.02 Archaeplastida
Zm00001e015053_P001 No alias No annotation 0.06 Archaeplastida
Zm00001e022915_P001 No alias transcription factor (BBX-DBB) 0.06 Archaeplastida
AT1G78600 LZF1, STH3, DBB3 light-regulated zinc finger protein 1 0.02 LandPlants
AT2G31380 STH salt tolerance homologue 0.02 LandPlants
AT4G10240 No alias B-box zinc finger family protein 0.02 LandPlants
GSVIVT01010794001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 LandPlants
Gb_39727 No alias transcription factor (BBX-DBB) 0.01 LandPlants
Pp3c17_14230V3.1 No alias light-regulated zinc finger protein 1 0.02 LandPlants
Smo271535 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 LandPlants
Solyc12g089240.2.1 No alias transcription factor (BBX-DBB) 0.04 LandPlants
Zm00001e007720_P001 No alias transcription factor (BBX-DBB) 0.04 LandPlants
Zm00001e015053_P001 No alias No annotation 0.06 LandPlants
Zm00001e022915_P001 No alias transcription factor (BBX-DBB) 0.07 LandPlants
AMTR_s00066p00204180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.01 SeedPlants
AT2G31380 STH salt tolerance homologue 0.02 SeedPlants
Gb_39727 No alias transcription factor (BBX-DBB) 0.01 SeedPlants
Zm00001e007720_P001 No alias transcription factor (BBX-DBB) 0.04 SeedPlants
Zm00001e015053_P001 No alias No annotation 0.04 SeedPlants
Zm00001e022915_P001 No alias transcription factor (BBX-DBB) 0.07 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000315 Znf_B-box 56 96
IPR000315 Znf_B-box 4 47
No external refs found!