1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01034188001

GSVIVT01034188001 (CBF5, AtCBF5, NAP57, AtNAP57)


Aliases : CBF5, AtCBF5, NAP57, AtNAP57

Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component


Gene families : OG0004128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004128_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034188001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00253700 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 OrthoFinder output from all 47 species
AT3G57150 CBF5, AtCBF5,... homologue of NAP57 0.04 OrthoFinder output from all 47 species
Ala_g39429 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.04 OrthoFinder output from all 47 species
Azfi_s0132.g049274 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000553.10 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 OrthoFinder output from all 47 species
Cre03.g172950 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 OrthoFinder output from all 47 species
Dcu_g11724 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Gb_32372 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.06 OrthoFinder output from all 47 species
Gb_34541 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.07 OrthoFinder output from all 47 species
Lfl_g10584 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.06 OrthoFinder output from all 47 species
MA_27456g0030 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.09 OrthoFinder output from all 47 species
Mp4g12650.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.05 OrthoFinder output from all 47 species
Pir_g14531 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.04 OrthoFinder output from all 47 species
Smo81986 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 OrthoFinder output from all 47 species
Solyc02g081810.4.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.07 OrthoFinder output from all 47 species
Spa_g05917 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.02 OrthoFinder output from all 47 species
Zm00001e017259_P001 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.05 OrthoFinder output from all 47 species
Zm00001e025570_P001 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.07 OrthoFinder output from all 47 species
Zm00001e035655_P001 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002478 PUA 233 305
IPR012960 Dyskerin-like 52 109
IPR032819 TruB_C 178 229
No external refs found!