AMTR_s00004p00026400 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.10

Description : Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana


Gene families : OG_01_0003420 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003420_tree ,
OG_02_0002877 (LandPlants) Phylogenetic Tree(s): OG_02_0002877_tree ,
OG_03_0009470 (SeedPlants) Phylogenetic Tree(s): OG_03_0009470_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00026400
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Solyc01g091450.3.1 No alias Pentatricopeptide repeat-containing protein At1g01970... 0.04 Archaeplastida
Solyc01g091450.3.1 No alias Pentatricopeptide repeat-containing protein At1g01970... 0.04 LandPlants
Solyc01g091450.3.1 No alias Pentatricopeptide repeat-containing protein At1g01970... 0.02 SeedPlants
Zm00001e035782_P001 No alias Pentatricopeptide repeat-containing protein At1g01970... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 163 186
IPR002885 Pentatricopeptide_repeat 234 260
IPR002885 Pentatricopeptide_repeat 269 297
IPR002885 Pentatricopeptide_repeat 341 368
IPR002885 Pentatricopeptide_repeat 199 228
No external refs found!