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  5. GSVIVT01033771001

GSVIVT01033771001 (U2AF35B, ATU2AF35B)


Aliases : U2AF35B, ATU2AF35B

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor complex.small subunit


Gene families : OG0001523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033771001
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AT1G27650 ATU2AF35A U2 snRNP auxiliary factor small subunit, putative 0.03 OrthoFinder output from all 47 species
Adi_g074632 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Aspi01Gene65065.t1 U2AF35B,... small subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Cba_g32835 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Ceric.39G048700.1 ATU2AF35A,... small subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Dac_g00507 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Dcu_g06790 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021925 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006835 dicarboxylic acid transport IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015740 C4-dicarboxylate transport IEP HCCA
BP GO:0015743 malate transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 150 173
IPR000571 Znf_CCCH 14 37
IPR000504 RRM_dom 83 139
No external refs found!