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  5. GSVIVT01033735001

GSVIVT01033735001 (emb1899, EMB175, EMB166)


Aliases : emb1899, EMB175, EMB166

Description : Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033735001
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00093260 SLO1,... Pentatricopeptide repeat-containing protein At2g22410,... 0.03 OrthoFinder output from all 47 species
AMTR_s00031p00067070 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.06 OrthoFinder output from all 47 species
Ala_g35529 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30566 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01606 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g03408 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g03542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70660 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene12658.t1 Aspi01Gene12658 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22967.t1 Aspi01Gene22967 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene35275.t1 Aspi01Gene35275 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0030.g024353 No alias not classified & original description: CDS=25-2709 0.03 OrthoFinder output from all 47 species
Cba_g13534 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20769 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g30018 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34897 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G031200.1 Ceric.04G031200 not classified & original description: pacid=50630737... 0.04 OrthoFinder output from all 47 species
Ceric.04G036800.1 Ceric.04G036800 not classified & original description: pacid=50632550... 0.02 OrthoFinder output from all 47 species
Ceric.09G010600.1 CRR22, Ceric.09G010600 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.09G092300.1 Ceric.09G092300 not classified & original description: pacid=50588334... 0.04 OrthoFinder output from all 47 species
Ceric.10G029900.1 Ceric.10G029900 not classified & original description: pacid=50612941... 0.04 OrthoFinder output from all 47 species
Ceric.18G000100.1 CRR22, Ceric.18G000100 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z131300.1 CRR22, Ceric.1Z131300 not classified & original description: pacid=50639026... 0.03 OrthoFinder output from all 47 species
Ceric.23G075200.1 Ceric.23G075200 not classified & original description: pacid=50610693... 0.06 OrthoFinder output from all 47 species
Ceric.25G031300.1 Ceric.25G031300 not classified & original description: pacid=50593567... 0.03 OrthoFinder output from all 47 species
Ceric.33G026100.1 Ceric.33G026100 not classified & original description: pacid=50606682... 0.05 OrthoFinder output from all 47 species
Ceric.33G060200.1 Ceric.33G060200 not classified & original description: pacid=50607485... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.30 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.01 OrthoFinder output from all 47 species
Dac_g42474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08560 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08804 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16553 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g23529 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g35622 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g39841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45798 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47764 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47937 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47940 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49048 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g51246 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16398 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31028 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g49997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_03345 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_08772 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Gb_15183 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.09 OrthoFinder output from all 47 species
Gb_33064 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_36806 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
LOC_Os01g62910.1 CRR2, LOC_Os01g62910 Pentatricopeptide repeat-containing protein At3g46790,... 0.04 OrthoFinder output from all 47 species
LOC_Os03g04390.1 LOC_Os03g04390 Pentatricopeptide repeat-containing protein At4g35130,... 0.06 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
Len_g05355 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18209 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18592 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23994 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g26583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28725 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g43451 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44793 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g24382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03905 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g04377 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g16238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22768 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41097 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g42903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43041 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44153 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48763 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16742 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g22679 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g30055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g34799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12907 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57980 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06986 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g16487 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16549 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36708 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g39170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo106861 OTP82 Pentatricopeptide repeat-containing protein At2g13600... 0.07 OrthoFinder output from all 47 species
Solyc09g065840.3.1 OSB1, Solyc09g065840 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.04 OrthoFinder output from all 47 species
Solyc11g065250.1.1 EMB2744, Solyc11g065250 Pentatricopeptide repeat-containing protein At5g39680... 0.04 OrthoFinder output from all 47 species
Tin_g15629 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000301_P001 Zm00001e000301 Pentatricopeptide repeat-containing protein At4g35130,... 0.07 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.05 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.04 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.06 OrthoFinder output from all 47 species
Zm00001e034445_P001 LPA66, Zm00001e034445 Pentatricopeptide repeat-containing protein At5g48910... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 357 385
IPR002885 Pentatricopeptide_repeat 667 691
IPR002885 Pentatricopeptide_repeat 565 589
IPR002885 Pentatricopeptide_repeat 329 355
IPR002885 Pentatricopeptide_repeat 492 515
IPR032867 DYW_dom 766 889
IPR002885 Pentatricopeptide_repeat 152 199
IPR002885 Pentatricopeptide_repeat 254 298
IPR002885 Pentatricopeptide_repeat 386 432
IPR002885 Pentatricopeptide_repeat 591 637
No external refs found!