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  5. GSVIVT01033674001

GSVIVT01033674001


Description : E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana


Gene families : OG0002193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033674001
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AT5G22920 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.06 OrthoFinder output from all 47 species
Ala_g05717 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05747 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14262 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017793001 No alias E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os01g52110.1 LOC_Os01g52110 Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os10g31850.1 LOC_Os10g31850 E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10429565g0010 No alias Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza... 0.04 OrthoFinder output from all 47 species
MA_10436725g0010 No alias E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_126866g0010 No alias Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza... 0.05 OrthoFinder output from all 47 species
Nbi_g02904 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g28745 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004657_P008 Zm00001e004657 E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR027370 Znf-RING_euk 166 206
IPR039512 RCHY1_zinc-ribbon 213 271
IPR008913 Znf_CHY 30 111
No external refs found!