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  5. GSVIVT01033428001

GSVIVT01033428001


Description : Spliceosome-associated protein 130 A OS=Arabidopsis thaliana


Gene families : OG0005770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005770_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033428001
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AT3G11960 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.06 OrthoFinder output from all 47 species
Adi_g008160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07804 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g12316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10841 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_25386 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os07g10390.1 LOC_Os07g10390 DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Lfl_g02452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432916g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_129261g0030 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_8503923g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Smo448595 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Solyc10g080630.2.1 Solyc10g080630 Spliceosome-associated protein 130 A OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e033071_P001 Zm00001e033071 DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 1055 1314
No external refs found!