GSVIVT01033401001

Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Gar1 core component

Gene families : OG0006021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01033401001
Cluster	HCCA: Cluster_62

Target	Alias	Description	ECC score	Gene Family Method
AT3G03920	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.21	OrthoFinder output from all 47 species
Als_g18644	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.05	OrthoFinder output from all 47 species
Aop_g02745	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.03	OrthoFinder output from all 47 species
Azfi_s0210.g058076	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.05	OrthoFinder output from all 47 species
Ceric.34G022300.1	Ceric.34G022300	core component *(GAR1) of H/ACA snoRNP RNA...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000310.30	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.03	OrthoFinder output from all 47 species
LOC_Os11g37080.1	LOC_Os11g37080	core component Gar1 of H/ACA small nucleolar...	0.1	OrthoFinder output from all 47 species
Mp5g08210.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.04	OrthoFinder output from all 47 species
Nbi_g03949	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.03	OrthoFinder output from all 47 species
Pp3c5_28430V3.1	Pp3c5_28430	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.09	OrthoFinder output from all 47 species
Sam_g01576	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.17	OrthoFinder output from all 47 species
Smo266974	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.11	OrthoFinder output from all 47 species
Solyc10g078540.3.1	Solyc10g078540	core component Gar1 of H/ACA small nucleolar...	0.34	OrthoFinder output from all 47 species
Zm00001e011244_P001	Zm00001e011244	core component Gar1 of H/ACA small nucleolar...	0.02	OrthoFinder output from all 47 species
Zm00001e024449_P002	Zm00001e024449	core component Gar1 of H/ACA small nucleolar...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007504	H/ACA_rnp_Gar1/Naf1	33	131

External Links

No external refs found!

GSVIVT01033401001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation