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  5. GSVIVT01032735001

GSVIVT01032735001


Description : Protein RETICULATA-RELATED 6, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001331 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001331_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032735001
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00088020 evm_27.TU.AmTr_v1... Protein RETICULATA-RELATED 6, chloroplastic... 0.03 OrthoFinder output from all 47 species
Ala_g27723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34266.t1 Aspi01Gene34266 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0055.g033944 No alias not classified & original description: CDS=18-2474 0.04 OrthoFinder output from all 47 species
Ceric.22G078500.1 Ceric.22G078500 not classified & original description: pacid=50614469... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021617.18 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g18040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_23598 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g39680.1 LOC_Os05g39680 component SNX2 of Retromer protein recycling complex 0.02 OrthoFinder output from all 47 species
Msp_g15648 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11767 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g20912 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13626 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
MF GO:0009916 alternative oxidase activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR007314 Cofac_haem-bd_dom 2 216
IPR021825 RETICULATA-related 323 507
No external refs found!