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  5. GSVIVT01032722001

GSVIVT01032722001


Description : Ribosome biogenesis protein NOP53 OS=Arabidopsis thaliana


Gene families : OG0004538 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004538_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032722001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT2G40430 No alias CONTAINS InterPro DOMAIN/s: P60-like... 0.12 OrthoFinder output from all 47 species
Ceric.07G089700.1 Ceric.07G089700 pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.19 No alias No description available 0.11 OrthoFinder output from all 47 species
Cre07.g348250 No alias Ribosome biogenesis protein NOP53 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
Dcu_g01228 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.03 OrthoFinder output from all 47 species
LOC_Os05g05220.1 LOC_Os05g05220 pre-60S ribosomal subunit assembly factor (SMO4) 0.11 OrthoFinder output from all 47 species
Mp1g17930.1 No alias pre-60S ribosomal subunit assembly factor (SMO4) 0.06 OrthoFinder output from all 47 species
Solyc02g068420.4.1 Solyc02g068420 pre-60S ribosomal subunit assembly factor (SMO4) 0.08 OrthoFinder output from all 47 species
Tin_g11754 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011687 Nop53/GLTSCR2 8 349
No external refs found!