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  5. GSVIVT01032591001

GSVIVT01032591001


Description : Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032591001

Target Alias Description ECC score Gene Family Method Actions
Ceric.01G002800.1 Ceric.01G002800 plastidial splicing factor *(PDM3) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g16308 No alias plastidial splicing factor *(PDM3) & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os01g61630.1 LOC_Os01g61630 Pentatricopeptide repeat-containing protein At5g39980,... 0.03 OrthoFinder output from all 47 species
Sam_g27577 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Smo73828 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.05 OrthoFinder output from all 47 species
Solyc02g087560.1.1 Solyc02g087560 Pentatricopeptide repeat-containing protein At5g39980,... 0.08 OrthoFinder output from all 47 species
Zm00001e019387_P001 Zm00001e019387 Pentatricopeptide repeat-containing protein At5g39980,... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 649 672
IPR002885 Pentatricopeptide_repeat 366 396
IPR002885 Pentatricopeptide_repeat 538 566
IPR002885 Pentatricopeptide_repeat 471 498
IPR002885 Pentatricopeptide_repeat 577 602
IPR002885 Pentatricopeptide_repeat 213 272
IPR002885 Pentatricopeptide_repeat 399 442
IPR002885 Pentatricopeptide_repeat 153 200
IPR002885 Pentatricopeptide_repeat 293 339
No external refs found!