1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01032537001

GSVIVT01032537001 (PUB38, ATPUB38)


Aliases : PUB38, ATPUB38

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type


Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032537001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Msp_g15300 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g087200.2.1 Solyc02g087200 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 29 96
IPR000225 Armadillo 241 277
No external refs found!