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  5. GSVIVT01032432001

GSVIVT01032432001


Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.MORC-type auxilary factor


Gene families : OG0000549 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000549_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032432001

Target Alias Description ECC score Gene Family Method Actions
AT1G19100 No alias Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase... 0.04 OrthoFinder output from all 47 species
Adi_g020435 No alias auxiliary factor of DNA methylation pathway *(MORC) &... 0.02 OrthoFinder output from all 47 species
Adi_g023944 No alias auxiliary factor of DNA methylation pathway *(MORC) &... 0.02 OrthoFinder output from all 47 species
Cba_g02111 No alias auxiliary factor of DNA methylation pathway *(MORC) &... 0.02 OrthoFinder output from all 47 species
Ceric.24G056600.1 Ceric.24G056600 auxiliary factor of DNA methylation pathway *(MORC) &... 0.03 OrthoFinder output from all 47 species
LOC_Os04g24550.1 LOC_Os04g24550 MORC-type auxiliary factor of DNA methylation pathway 0.03 OrthoFinder output from all 47 species
Pir_g09810 No alias auxiliary factor of DNA methylation pathway *(MORC) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008716 D-alanine-D-alanine ligase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!