1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01032431001

GSVIVT01032431001


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana


Gene families : OG0015202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0015202_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032431001
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Gb_28586 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
LOC_Os03g49464.2 LOC_Os03g49464 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_28762g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Zm00001e012231_P001 Zm00001e012231 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 248 278
IPR002885 Pentatricopeptide_repeat 119 143
IPR002885 Pentatricopeptide_repeat 90 117
IPR002885 Pentatricopeptide_repeat 515 542
IPR002885 Pentatricopeptide_repeat 355 382
IPR002885 Pentatricopeptide_repeat 555 578
IPR002885 Pentatricopeptide_repeat 487 513
IPR002885 Pentatricopeptide_repeat 411 459
IPR002885 Pentatricopeptide_repeat 148 194
IPR002885 Pentatricopeptide_repeat 280 327
No external refs found!