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  5. GSVIVT01032412001

GSVIVT01032412001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.PES component


Gene families : OG0005537 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032412001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00157670 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
AT5G14520 No alias pescadillo-related 0.17 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.62 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre16.g683793 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Ehy_g01487 No alias component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.03 OrthoFinder output from all 47 species
Gb_12407 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 OrthoFinder output from all 47 species
LOC_Os03g49210.1 LOC_Os03g49210 component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 OrthoFinder output from all 47 species
Nbi_g10476 No alias component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.05 OrthoFinder output from all 47 species
Pp3c3_23250V3.1 Pp3c3_23250 pescadillo-related 0.04 OrthoFinder output from all 47 species
Smo166421 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Solyc07g047670.3.1 Solyc07g047670 component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR001357 BRCT_dom 341 428
IPR010613 PES 10 264
No external refs found!