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  5. GSVIVT01032402001

GSVIVT01032402001


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032402001
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
Adi_g018550 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05367 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41903.t1 Aspi01Gene41903 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013740 No alias not classified & original description: CDS=1-1461 0.02 OrthoFinder output from all 47 species
Cba_g02546 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19823 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cre10.g428200 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g15425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_29426 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os11g41890.1 LOC_Os11g41890 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_93349g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g10695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07737 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19415 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc06g062730.2.1 Solyc06g062730 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 43 110
IPR000504 RRM_dom 131 199
No external refs found!