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  5. GSVIVT01032233001

GSVIVT01032233001 (ATSS4, SS4, SSIV)


Aliases : ATSS4, SS4, SSIV

Description : Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana


Gene families : OG0000693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000693_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032233001

Target Alias Description ECC score Gene Family Method Actions
Als_g17843 ATSS4, SS4, SSIV not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G125000.1 ATSS4, SS4,... starch synthase *(SS4) & original description:... 0.03 OrthoFinder output from all 47 species
Cre13.g579598 ATSS3, SS3 Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002377 No alias not classified & original description: CDS=88-582 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013534 Starch_synth_cat_dom 109 337
IPR001296 Glyco_trans_1 414 576
No external refs found!