1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01032197001

GSVIVT01032197001


Description : Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001331 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001331_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032197001
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT2G40400 No alias Protein of unknown function (DUF399 and DUF3411) 0.05 OrthoFinder output from all 47 species
AT3G56140 No alias Protein of unknown function (DUF399 and DUF3411) 0.03 OrthoFinder output from all 47 species
Adi_g048192 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g02433 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g27483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g34117 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0055.g033944 No alias not classified & original description: CDS=18-2474 0.03 OrthoFinder output from all 47 species
Cba_g03217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G078500.1 Ceric.22G078500 not classified & original description: pacid=50614469... 0.06 OrthoFinder output from all 47 species
Ceric.29G029100.1 Ceric.29G029100 not classified & original description: pacid=50624979... 0.04 OrthoFinder output from all 47 species
Dac_g18040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02819 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g11697 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g22985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g61120.1 LOC_Os01g61120 Protein RETICULATA-RELATED 6, chloroplastic... 0.07 OrthoFinder output from all 47 species
Len_g11651 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g35960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g12361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15648 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g02954 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08828 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38821 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g07921 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g08153 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g087750.4.1 Solyc01g087750 Protein RETICULATA-RELATED 4, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g07578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g52656 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13626 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19385 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR021825 RETICULATA-related 1 164
No external refs found!