GSVIVT01032162001


Description : Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032162001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00203740 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein At4g39620,... 0.02 OrthoFinder output from all 47 species
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.2 OrthoFinder output from all 47 species
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 OrthoFinder output from all 47 species
Aev_g05989 EMB2453, ATPPR5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g33753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G045800.1 EMB2453, ATPPR5,... not classified & original description: pacid=50604035... 0.03 OrthoFinder output from all 47 species
Dac_g11531 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01190 EMB2453, ATPPR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g02809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08087 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 OrthoFinder output from all 47 species
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 OrthoFinder output from all 47 species
LOC_Os02g51480.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.05 OrthoFinder output from all 47 species
LOC_Os03g02430.1 LOC_Os03g02430 Pentatricopeptide repeat-containing protein At3g53170... 0.04 OrthoFinder output from all 47 species
LOC_Os03g19650.3 EMB2750, LOC_Os03g19650 Pentatricopeptide repeat-containing protein At3g06430,... 0.05 OrthoFinder output from all 47 species
LOC_Os06g07550.1 LOC_Os06g07550 Pentatricopeptide repeat-containing protein At5g48730,... 0.07 OrthoFinder output from all 47 species
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 OrthoFinder output from all 47 species
Mp5g02180.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 OrthoFinder output from all 47 species
Msp_g27398 EMB2453, ATPPR5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g07398 EMB2453, ATPPR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g09304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16720 EMB2453, ATPPR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g20163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11535 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016075 No alias not classified & original description: CDS=33-1412 0.02 OrthoFinder output from all 47 species
Sam_g13579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo135826 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.03 OrthoFinder output from all 47 species
Solyc01g006500.4.1 Solyc01g006500 Pentatricopeptide repeat-containing protein At5g48730,... 0.04 OrthoFinder output from all 47 species
Solyc04g054270.4.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.03 OrthoFinder output from all 47 species
Solyc08g045780.4.1 Solyc08g045780 Pentatricopeptide repeat-containing protein At3g53170... 0.05 OrthoFinder output from all 47 species
Tin_g00939 EMB2453, ATPPR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g36742 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e023883_P001 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5,... 0.03 OrthoFinder output from all 47 species
Zm00001e031052_P001 Zm00001e031052 Pentatricopeptide repeat-containing protein At5g48730,... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 165 209
IPR002885 Pentatricopeptide_repeat 268 316
IPR002885 Pentatricopeptide_repeat 410 455
IPR002885 Pentatricopeptide_repeat 338 387
IPR002885 Pentatricopeptide_repeat 130 159
IPR002885 Pentatricopeptide_repeat 235 264
No external refs found!