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  5. GSVIVT01032102001

GSVIVT01032102001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL30 component


Gene families : OG0000968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000968_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032102001
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AT1G77940 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.1 OrthoFinder output from all 47 species
AT3G18740 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.16 OrthoFinder output from all 47 species
Adi_g019990 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g051341 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Adi_g104467 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g12139 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Ala_g33421 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aob_g13899 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g17201 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g17616 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g23120 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Aop_g69765 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Aspi01Gene70271.t1 Aspi01Gene70271 component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g77370 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.21G027700.1 Ceric.21G027700 component *(eL30) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ceric.31G042300.1 Ceric.31G042300 component *(eL30) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ceric.36G058900.1 Ceric.36G058900 component *(eL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001164.6 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Cre10.g420750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Dcu_g06686 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Dde_g45559 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Gb_02409 No alias component RPL30 of LSU proteome component 0.12 OrthoFinder output from all 47 species
LOC_Os01g16890.1 LOC_Os01g16890 component RPL30 of LSU proteome component 0.16 OrthoFinder output from all 47 species
LOC_Os01g59730.1 LOC_Os01g59730 component RPL30 of LSU proteome component 0.06 OrthoFinder output from all 47 species
LOC_Os05g41110.1 LOC_Os05g41110 component RPL30 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Len_g15495 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g14124 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g21475 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g32270 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_6354g0010 No alias component RPL30 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Mp7g01690.1 No alias component RPL30 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Msp_g41110 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g36755 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c12_9290V3.1 Pp3c12_9290 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 OrthoFinder output from all 47 species
Pp3c16_10400V3.1 Pp3c16_10400 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.08 OrthoFinder output from all 47 species
Pp3c25_9320V3.1 Pp3c25_9320 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.07 OrthoFinder output from all 47 species
Pp3c4_15480V3.1 Pp3c4_15480 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.12 OrthoFinder output from all 47 species
Ppi_g07992 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g00684 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g11494 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g38074 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g41445 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g41910 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g42031 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Smo19071 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Solyc01g009100.4.1 Solyc01g009100 component RPL30 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Solyc04g072660.4.1 Solyc04g072660 component RPL30 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Solyc11g071490.2.1 Solyc11g071490 component RPL30 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Spa_g00831 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Tin_g05827 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Zm00001e025492_P001 Zm00001e025492 component RPL30 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Zm00001e031987_P001 Zm00001e031987 component RPL30 of LSU proteome component 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 13 105
No external refs found!