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  5. GSVIVT01031470001

GSVIVT01031470001 (ATLIG1, LIG1)


Aliases : ATLIG1, LIG1

Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).DNA ligase (LIG1)


Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031470001
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT1G08130 ATLIG1, LIG1 DNA ligase 1 0.07 OrthoFinder output from all 47 species
Aev_g01376 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Aev_g20608 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000754.31 ATLIG1, LIG1 DNA ligase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre07.g325716 ATLIG1, LIG1 DNA damage response.DNA repair mechanisms.base excision... 0.02 OrthoFinder output from all 47 species
Ehy_g20815 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
LOC_Os10g34750.1 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.04 OrthoFinder output from all 47 species
Len_g30745 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.05 OrthoFinder output from all 47 species
Msp_g15129 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g44192 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Ppi_g48452 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012541 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0162.g023987 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Solyc11g066370.2.1 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.02 OrthoFinder output from all 47 species
Zm00001e004508_P002 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.04 OrthoFinder output from all 47 species
Zm00001e020139_P002 AtLIG6, LIG6,... DNA ligase (LIG6) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR012310 DNA_ligase_ATP-dep_cent 351 555
IPR012308 DNA_ligase_ATP-dep_N 108 283
IPR012309 DNA_ligase_ATP-dep_C 580 691
No external refs found!