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  5. GSVIVT01031411001

GSVIVT01031411001


Description : RNA biosynthesis.transcriptional activation.PHD finger transcription factor


Gene families : OG0003668 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003668_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031411001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT5G12400 No alias DNA binding;zinc ion binding;DNA binding 0.11 OrthoFinder output from all 47 species
AT5G35210 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.06 OrthoFinder output from all 47 species
Adi_g023154 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107345 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07239 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36310.t1 Aspi01Gene36310 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene36311.t1 Aspi01Gene36311 PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36312.t1 Aspi01Gene36312 PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.29G051900.1 Ceric.29G051900 PHD finger transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g04154 No alias PHD finger transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g08699 No alias PHD finger transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17420 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31521 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os11g05130.1 LOC_Os11g05130 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Lfl_g05757 No alias PHD finger transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
MA_10689g0010 No alias PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Mp4g03480.1 No alias PHD finger transcription factor 0.06 OrthoFinder output from all 47 species
Ore_g38137 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03291 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g065160.3.1 Solyc11g065160 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Solyc11g066780.3.1 Solyc11g066780 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e035778_P001 Zm00001e035778 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
InterPro domains Description Start Stop
IPR028942 WHIM1_dom 123 165
IPR018501 DDT_dom 20 75
IPR019787 Znf_PHD-finger 199 241
No external refs found!