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Aliases : HDA3, ATHD2A, HDT1, HD2A
Description : Chromatin organisation.histone modifications.histone deacetylation.HD2 histone deacetylase
Gene families : OG0002165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002165_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01031404001 | |
| Cluster | HCCA: Cluster_62 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G27840 | HDA13, HDT04, HDT4 | histone deacetylase-related / HD-related | 0.08 | OrthoFinder output from all 47 species | |
| AT3G44750 | HDA3, ATHD2A, HDT1, HD2A | histone deacetylase 3 | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g045241 | HDT3, HD2C | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g106676 | HDT3, HD2C | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g30097 | HD2, HDA4, HD2B,... | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g54155 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g12332 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g15503 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene22740.t1 | HDA3, ATHD2A,... | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene25677.t1 | HDA3, ATHD2A,... | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0245.g060013 | No alias | not classified & original description: CDS=211-1146 | 0.13 | OrthoFinder output from all 47 species | |
| Cba_g05176 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.33G031600.1 | HDA3, ATHD2A,... | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000388.65 | ATFKBP53, FKBP53 | Protein modification.protein folding and quality... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g11095 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g20303 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g20489 | HDA3, ATHD2A, HDT1, HD2A | peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os05g51830.1 | HDT3, HD2C,... | histone deacetylase (HDT/HD2) | 0.06 | OrthoFinder output from all 47 species | |
| Len_g17092 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.07 | OrthoFinder output from all 47 species | |
| MA_3905g0020 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| MA_601245g0010 | No alias | histone deacetylase (HDT/HD2) | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g12444 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g06815 | HD2, HDA4, HD2B,... | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g34458 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14661 | No alias | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Sam_g14662 | No alias | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Smo428242 | No alias | Chromatin organisation.histone modifications.histone... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc09g009030.4.1 | HDA3, ATHD2A,... | histone deacetylase (HDT/HD2) | 0.07 | OrthoFinder output from all 47 species | |
| Solyc11g066840.3.1 | HD2, HDA4, HD2B,... | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g40541 | HDT3, HD2C | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Tin_g14352 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g20431 | HDA3, ATHD2A, HDT1, HD2A | HD2-type histone deacetylase *(HD2/HDT) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e027707_P004 | HDT3, HD2C,... | histone deacetylase (HDT/HD2) | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e032246_P002 | HDA3, ATHD2A,... | histone deacetylase (HDT/HD2) | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005622 | intracellular anatomical structure | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006414 | translational elongation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |