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  5. GSVIVT01031115001

GSVIVT01031115001


Description : Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana


Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031115001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00058780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 OrthoFinder output from all 47 species
AMTR_s00057p00206860 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
Adi_g007698 No alias auxiliary component *(JMJ24) of COMPASS histone... 0.07 OrthoFinder output from all 47 species
Adi_g020057 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059802 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086369 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g109477 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g113340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113607 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17454 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08108 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g11073 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13468 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20293 No alias histone demethylase *(KDM3) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g54566 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09074 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03237 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05543 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19024 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13978.t1 Aspi01Gene13978 histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40711.t1 Aspi01Gene40711 histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0100.g044279 No alias histone demethylase *(KDM3) & original description: CDS=159-2921 0.03 OrthoFinder output from all 47 species
Azfi_s0314.g064244 No alias histone demethylase *(KDM3) & original description: CDS=76-4551 0.03 OrthoFinder output from all 47 species
Cba_g04079 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G031200.1 Ceric.06G031200 histone demethylase *(KDM3) & original description:... 0.1 OrthoFinder output from all 47 species
Ceric.11G069000.1 Ceric.11G069000 histone demethylase *(KDM3) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G078400.1 Ceric.21G078400 histone demethylase *(KDM3) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.23G014800.1 Ceric.23G014800 histone demethylase *(KDM3) & original description:... 0.05 OrthoFinder output from all 47 species
Cre10.g446850 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
Dac_g16289 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g12281 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18399 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09272 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17375 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_03988 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
LOC_Os03g31594.1 LOC_Os03g31594 histone demethylase (KDM3). transcription factor (JUMONJI) 0.06 OrthoFinder output from all 47 species
Len_g08650 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12082 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14814 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04275 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g40363 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
MA_103030g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
MA_218662g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
MA_8576373g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g16206 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g25890 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09343 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g25616 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30156 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g45466 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g05001 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15776 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g19483 No alias auxiliary component *(JMJ24) of COMPASS histone... 0.02 OrthoFinder output from all 47 species
Ppi_g04006 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05933 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31029 No alias histone demethylase *(KDM3) & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019833 No alias histone demethylase *(KDM3) & original description: CDS=452-4519 0.05 OrthoFinder output from all 47 species
Sam_g17510 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26711 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29690 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc02g078790.4.1 Solyc02g078790 histone demethylase (KDM3). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Solyc02g079300.3.1 B160, Solyc02g079300 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Solyc02g082400.4.1 Solyc02g082400 histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Solyc03g083240.4.1 Solyc03g083240 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Solyc08g065800.1.1 Solyc08g065800 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc08g065820.3.1 Solyc08g065820 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Spa_g48969 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09788 No alias histone demethylase *(KDM3) & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g17158 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e025393_P001 Zm00001e025393 histone demethylase (KDM3). transcription factor (JUMONJI) 0.06 OrthoFinder output from all 47 species
Zm00001e038213_P003 Zm00001e038213 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
InterPro domains Description Start Stop
IPR018866 Znf-4CXXC_R1 119 186
No external refs found!