GSVIVT01030942001 (AtLIG6, LIG6)

Aliases : AtLIG6, LIG6

Description : DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG6-type DNA ligase

Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01030942001
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00073450	AtLIG6, LIG6,...	DNA damage response.DNA repair mechanisms.nonhomologous...	0.03	OrthoFinder output from all 47 species
Ceric.28G053000.1	ATLIG1, LIG1,...	EC_6.5 ligase forming phosphoric ester bond & original...	0.05	OrthoFinder output from all 47 species
LOC_Os01g49180.1	AtLIG6, LIG6,...	DNA ligase (LIG6)	0.06	OrthoFinder output from all 47 species
Len_g24351	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species
Mp2g23970.1	AtLIG6, LIG6	DNA ligase (LIG6)	0.02	OrthoFinder output from all 47 species
Msp_g15129	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species
Ore_g16105	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species
Solyc02g091120.4.1	AtLIG6, LIG6,...	DNA ligase 6 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Tin_g13706	AtLIG6, LIG6	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	None	Extended
MF	GO:0003910	DNA ligase (ATP) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012308	DNA_ligase_ATP-dep_N	762	938
IPR012309	DNA_ligase_ATP-dep_C	1253	1357
IPR012310	DNA_ligase_ATP-dep_cent	1008	1227
IPR011084	DRMBL	272	375

External Links

No external refs found!

GSVIVT01030942001 (AtLIG6, LIG6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation