GSVIVT01030462001 (CSLB04, ATCSLB4, ATCSLB04)

Aliases : CSLB04, ATCSLB4, ATCSLB04

Description : Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica

Gene families : OG0000089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000089_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01030462001
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00246190	CSLD1, ATCSLD1,...	Cell wall.hemicellulose.heteromannan.synthesis.mannan...	0.03	OrthoFinder output from all 47 species
AMTR_s00022p00129900	ATCSLD4, CSLD4,...	Cell wall.hemicellulose.heteromannan.synthesis.mannan...	0.03	OrthoFinder output from all 47 species
AMTR_s00045p00146460	IXR1, CEV1,...	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.02	OrthoFinder output from all 47 species
AMTR_s00061p00200560	ATCSLE1, CSLE1,...	Cellulose synthase-like protein E6 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
AT2G33100	CSLD1, ATCSLD1	cellulose synthase-like D1	0.04	OrthoFinder output from all 47 species
AT4G38190	ATCSLD4, CSLD4	cellulose synthase like D4	0.04	OrthoFinder output from all 47 species
Adi_g057254	ATCSLD3, KJK, CSLD3	mannan synthase *(CSLD) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g080371	ATCSLD3, KJK, CSLD3	mannan synthase *(CSLD) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g117946	ATCSLD3, KJK, CSLD3	mannan synthase *(CSLD) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g28345	ATH-A, CESA2, ATCESA2	catalytic component *(CesA) of cellulose synthase...	0.02	OrthoFinder output from all 47 species
Aev_g49400	ATH-A, CESA2, ATCESA2	catalytic component *(CesA) of cellulose synthase...	0.03	OrthoFinder output from all 47 species
Aspi01Gene30179.t1	ATCSLD3, KJK,...	mannan synthase *(CSLD) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene68876.t1	ATCSLD3, KJK,...	mannan synthase *(CSLD) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g05773	MUR10, ATCESA7,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g10901	IXR1, CEV1,...	glycosyltransferase *(CSLB/CSLH) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g03999	ATH-A, CESA2, ATCESA2	catalytic component *(CesA) of cellulose synthase...	0.03	OrthoFinder output from all 47 species
Ehy_g06186	CESA09, CESA9	catalytic component *(CesA) of cellulose synthase...	0.02	OrthoFinder output from all 47 species
Ehy_g18330	ATCSLD2, CSLD2	mannan synthase *(CSLD) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01006760001	ATCSLE1, CSLE1	Cellulose synthase-like protein E6 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
GSVIVT01006764001	ATCSLE1, CSLE1	Cellulose synthase-like protein E6 OS=Oryza sativa...	0.06	OrthoFinder output from all 47 species
GSVIVT01014705001	ATCSLE1, CSLE1	Cellulose synthase-like protein E6 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
GSVIVT01018144001	ATCSLG2, CSLG2	Cellulose synthase-like protein G2 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01021248001	CESA8, LEW2,...	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01023643001	MUR10, ATCESA7,...	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01028234001	AtCESA1, RSW1, CESA1	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.04	OrthoFinder output from all 47 species
GSVIVT01028402001	CESA4, NWS2, IRX5	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01030456001	CSLB04, ATCSLB4, ATCSLB04	Cellulose synthase-like protein H1 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
Gb_02801	ATCSLD3, KJK, CSLD3	mannan synthase (CSLD)	0.02	OrthoFinder output from all 47 species
Gb_04147	ATH-A, CESA2, ATCESA2	catalytic component CesA of cellulose synthase complex	0.03	OrthoFinder output from all 47 species
Gb_25252	ATCSLE1, CSLE1	Cellulose synthase-like protein E1 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
Gb_32651	IXR1, CEV1,...	catalytic component CesA of cellulose synthase complex	0.03	OrthoFinder output from all 47 species
Gb_39671	ATCSLD3, KJK, CSLD3	mannan synthase (CSLD)	0.02	OrthoFinder output from all 47 species
LOC_Os06g02180.1	ATCSLD3, KJK,...	mannan synthase (CSLD)	0.03	OrthoFinder output from all 47 species
LOC_Os09g25490.1	MUR10, ATCESA7,...	catalytic component CesA of cellulose synthase complex	0.03	OrthoFinder output from all 47 species
Mp5g24550.1	ATCSLD3, KJK, CSLD3	mannan synthase (CSLD)	0.03	OrthoFinder output from all 47 species
Pir_g13589	IXR1, CEV1,...	catalytic component *(CesA) of cellulose synthase...	0.02	OrthoFinder output from all 47 species
Ppi_g10495	ATCSLD3, KJK, CSLD3	mannan synthase *(CSLD) & original description: none	0.02	OrthoFinder output from all 47 species
Smo83878	ATCSLD3, KJK, CSLD3	Cell wall.hemicellulose.heteromannan.synthesis.mannan...	0.02	OrthoFinder output from all 47 species
Solyc08g076320.3.1	ATCSLD3, KJK,...	mannan synthase (CSLD)	0.05	OrthoFinder output from all 47 species
Solyc10g074620.3.1	ATCSLD4, CSLD4,...	mannan synthase (CSLD)	0.04	OrthoFinder output from all 47 species
Solyc12g015770.3.1	ATCSLE1, CSLE1,...	NOB1 pre-rRNA processing endonuclease involved in ITS1...	0.03	OrthoFinder output from all 47 species
Spa_g01345	IXR1, CEV1,...	catalytic component *(CesA) of cellulose synthase...	0.02	OrthoFinder output from all 47 species
Spa_g16433	ATCSLD3, KJK, CSLD3	mannan synthase *(CSLD) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g17565	ATH-A, CESA2, ATCESA2	catalytic component *(CesA) of cellulose synthase...	0.04	OrthoFinder output from all 47 species
Zm00001e034466_P001	ATCSLE1, CSLE1,...	Cellulose synthase-like protein E6 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008194	UDP-glycosyltransferase activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	None	Extended
MF	GO:0016758	hexosyltransferase activity	None	Extended
MF	GO:0016759	cellulose synthase activity	None	Extended
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEA	Interproscan
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	IEA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035251	UDP-glucosyltransferase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005150	Cellulose_synth	95	400
IPR005150	Cellulose_synth	410	756

External Links

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GSVIVT01030462001 (CSLB04, ATCSLB4, ATCSLB04)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation